PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g022800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 223aa    MW: 24812.5 Da    PI: 8.0646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g022800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C ++F ++  L  H++ H
  Csa08g022800.1 68 FSCNYCQRTFYSSQALGGHQNAH 90
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-46194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-76395No hitNo description
PROSITE profilePS5015711.6356895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDASIVSFSE TFPNQDSLNQ SLEQRTKDEE KDVHDSSQEH LNQELNLIDC IDTTSIVKGS  60
TSTEQKLFSC NYCQRTFYSS QALGGHQNAH KRERTLAKRG QRLAASASAF GHPYGFSPLP  120
FHGQYNNRSL GIQAHSMIHK VSSYKGFGGH YGQLNWSRIP FDQQPAIGKL PTTENFHHHH  180
HQRMMMAPSL SNNIGRSSSN IGRILEGTPA LEQWCGDGGL LK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0059641e-142AC005964.1 Arabidopsis thaliana chromosome V map 60.5 cM, complete sequence.
GenBankAC0062591e-142AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.
GenBankAK2277061e-142AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08.
GenBankATHZFPC1e-142L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds.
GenBankBT0083081e-142BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds.
GenBankCP0026881e-142CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421361.11e-167PREDICTED: zinc finger protein 3-like
SwissprotQ392621e-114ZFP3_ARATH; Zinc finger protein 3
TrEMBLR0HCQ81e-128R0HCQ8_9BRAS; Uncharacterized protein
STRINGscaffold_602617.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-106zinc finger protein 3